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バークホルデリア科

出典: フリー百科事典『ウィキペディア（Wikipedia）』
バークホルデリア科
タイプ属であるバークホルデリア属の代表的な菌種である類鼻疽菌（Burkholderia pseudomallei）の血液寒天培地上のコロニー
分類
ドメイン : 真正細菌
Bacteria
門 : Pseudomonadota門
綱 : ベータプロテオバクテリア綱
Betaproteobacteria
目 : バークホルデリア目
Burkholderiales
科 : バークホルデリア科
Burkholderiaceae
学名
Burkholderiaceae
Garrity et al. 2006[1]
(IJSEMリストに記載 2006)[2]
タイプ属
バークホルデリア属
Burkholderia
Yabuuchi et al. 1992[3]
(IJSEMリストに記載 1993)[4]
修正　Gillis et al. 1995[5]
(IJSEMリストに記載 1995)[6]
修正　Sawana et al. 2014[7]
(IJSEMリストに記載 2015)[8]
修正　Dobritsa & Samadpour 2019[9]
(IJSEMリストに記載 2019)[10]
シノニム
  • キチニモナス科
    Chitinimonadaceae
Chuvochina et al. 2024[11]
(IJSEMリストに記載 2024)[12]
下位分類（属）

本文を参照

バークホルデリア科（バークホルデリアか、Burkholderiaceae）は真正細菌Pseudomonadota門ベータプロテオバクテリア綱バークホルデリア目の科の一つである。メンバーは非常に多様な環境に生息しており、これまでにイネ等植物の根圏[5]、水圏[13][14]、硫化水素を含む温泉[15]、草[16]や菌類[17]、昆虫腸内[18][19]、繊毛虫[20]及び線虫[21]細胞内、土壌[22]、鉄鉱石[23]、活性汚泥[24]、ヒト口腔[25]から分離されている。偏性好気性及び通性嫌気性の化学合成有機栄養細菌並びに偏性及び通性化学合成無機栄養細菌を含む[1]。自然及び農業環境だけでなく臨床現場でも出現し、日和見感染性のヒト、動物及び植物病原体[26][27]が含まれ、例えば鼻疽菌（Burkholderia mallei）や類鼻疽菌（Burkholderia pseudomallei）がある[1]。そのほか、根粒菌[27]、難分解性の有害物質（生体異物及び環境汚染物質）の潜在的な生分解者[22]、有用有機物の産生菌[28][29]も含まれる。鱗を食するメダカ科魚類のpupfish（Cyprinodon desquamator）の腸内に豊富に存在すること、それは一般的な実験用飼料を与えていた後でも変わらないことが確認されており、鱗の消化を補助する可能性が示唆されている(Heras & Martin 2022)。

下位分類（属）

[編集]

バークホルデリア科は以下の属を含む(2024年6月現在)[30]。

Yabuuchi et al. 1993[3](IJSEMリストに記載 1993)[4]、修正　Gillis et al. 1995[5] (IJSEMリストに記載 1995)[6]、修正　Sawana et al. 2014[7] (IJSEMリストに記載 2015)[8]、修正　Dobritsa & Samadpour 2019[9] (IJSEMリストに記載 2019)[10]
ガンマプロテオバクテリア綱のPseudomonas（シュードモナス属）に分類されていた6種が1993年に再分類されてバークホルデリア科が誕生した[3]。その後もメンバーは増え、類鼻疽菌であるBurkholderia pseudomallei（バークホルデリア・シュードマレイ）のほか、Burkholderia cepacia（バークホルデリア・セパシア、タイプ種）、Burkholderia multivorans（バークホルデリア・マルチボランス）、Burkholderia mallei（バークホルデリア・マレイ）など多くの種を含む[31]。一部はその後さらに分類しなおされ、Ralstonia（ラルストニア属）やCupriavidus（クプリビダス属）、Pandoraea（パンドラエア属）などに移っている。
Dobritsa & Samadpour 2016[32] (IJSEMリストに記載 2016)[33]
Caballeronia glatheiなど多くの種を含む。クロマツと共生している菌根性きのこに対して特異的に菌糸生育を促進する作用を有し、ショウロ栽培への利用が研究されている[34]。Coreoidea（ヘリカメムシ上科）と共生する腸内細菌群であることでもしられている[18][35]。
Madhaiyan et al. 2020[36] (IJSEMリストに記載 2020)[37]
シンガポールで栽培されていたアブラヤシから単離されたChitinasiproducens palmaeのみで構成される[36]。
Chang et al. 2004[38] (IJSEMリストに記載 2004)[39]、修正　Kim et al. 2006[40] (IJSEMリストに記載 2006)[41]
キチン分解活性を持つ好気性菌[38]。Chitinimonas taiwanensis（キチニモナス・タイワネンシス）などを含む。
Makkar & Casida 1987[42]、修正　Vandamme & Coenye 2004[43] (IJSEMリストに記載 2005[44]
Cupriavidus necator（カプリアビダス・ネカトル）やCupriavidus metallidurans（カプリアビダス・メタリデュランス）など多くの種を含む。多様な酵素を産生することで知られており、様々な有用な酵素及びその酵素反応産物を得ることを目的に研究されている。例えば、L-スレオニン脱水素酵素[28]、光学活性アミノ酸[45]、光学活性カルボン酸[46]、ポリヒドロキシアルカン酸[47]などがある。また、その酵素活性の豊富さゆえに難分解性の化学物質で汚染された土壌や地下水の環境浄化への応用も期待されている。例えば、石油系炭化水素類、特にベンゼン、トルエン、キシレン等の芳香族炭化水素類に対する分解能力が高いことが判明しており、石油で汚染された土壌や地下水などへの応用[48]や、ディルドリンやエンドリンなどのドリン系農薬化合物を分解できる数少ない微生物としてそれら農薬残留農地への応用[49]などが研究されている。
Kim et al. 2019[19] (IJSEMリストに記載 2019)[50]
水生昆虫Cincticostella levanidovae（カスタネアマダラカゲロウ）の腸から分離されたEphemeroptericola cinctiostellaeのみを含む[19]。
Chen et al. 2017[14] (IJSEMリストに記載 2017)[51]
台湾の湖の淡水から分離されたFormosimonas limnophilaのみを含む[14]。
Vaz-Moreira et al. 2015[13] (IJSEMリストに記載 2016)[52]
ポルトガル北部のドウロ川淡水から分離された嫌気性菌Hydromonas duriensisのみを含む[13]。
Gerner-Smidt et al. 1995[25] (IJSEMリストに記載 1995)[53]
ヒト口腔内に生息する通性嫌気性菌Lautropia mirabilis（ロートロピア・ミラビリス）のみを含む[25]。
Spring et al. 2001[54] (IJSEMリストに記載 2001)[55]、修正　Lu et al. 2011[56] (IJSEMリストに記載 2001)[57]、修正　Nguyen & Kim 2017[58] (IJSEMリストに記載 2018)[59]
淡水湖から発見された偏性好気性チオ硫酸塩酸化細菌Limnobacter thiooxidans（リムノバクター・チオオキシダンス）などを含む[54]。
Estrada-de Los Santos et al. 2018[60] (IJSEMリストに記載 2018)[61]
好気性菌のMycetohabitans endofungorumとMycetohabitans rhizoxinicaのみを含む[60]。
Ohshima et al. 2016[17] (IJSEMリストに記載 2016)[62]
ケカビ亜門（Mucoromycotina）菌類であるMortierella（クサレケカビ）内生細菌Mycoavidus cysteinexigensのみを含む[17]。
Coenye et al. 2000[63] (IJSEMリストに記載 2000)[64]、修正　Jeong et al. 2016[65] (IJSEMリストに記載 2016)[66]
嚢胞性線維症患者の喀痰及び土壌から分離されたPandoraea apista（パンドレア・アピスタ）[63]など多くの種を含む。臨床検体だけでなく、硫化物を含む堆積物の上の酸素水層、根圏土壌、畑地土壌、鶏糞などの環境サンプルからも単離されている[63][67][68]。病原菌としての医学研究だけでなく、女性ホルモン物質[69]や芳香族炭化水素[70]といった環境汚染物質に対する分解能や二酸化炭素を有用物質に返還する炭酸固定能力[71]を応用しようとする研究も行われている。
Sawana et al. 2015[7] (IJSEMリストに記載 2015)[72]、修正　Dobritsa & Samadpour 2016[32] (IJSEMリストに記載 2016)[33]
Paraburkholderia graminisなど多くの種を含む。ショウロと内生共生しその生育を促進する[73]。
Wang et al. 2024[74] (IJSEMリストに記載 2024)[75]
偏性好気性糸状菌Parachitinimonas caeni（パラキチニモナス・カエニ）のみを含む。下水処理場の活性汚泥から発見された[74]。
Lin et al. 2020[76] (IJSEMリストに記載 2020)[77]
森林土壌より単離された好気性菌であるRobbsia andropogonisとRobbsia betulipollinisのみを含む[76]。
Jendrossek 2001[78] (IJSEMリストに記載 2001)[79]
好気性菌Paucimonas lemoignei（パウシモナス・レモイグネイ）のみを含む[78]。
Heckmann & Schmidt 1987[20]、修正　Hahn et al. 2009[80] (IJSEMリストに記載 2009)[81]
Polynucleobacter necessarius[20]など多くの種を含む。P. necessariusは、Euplotes属繊毛虫の細胞質にオミクロンとして存在する偏性内部共生株と、淡水の湖沼や河川に生息する自由生活株の両方を有する[80]。
Felföldi et al. 2017[82] (IJSEMリストに記載 2017)[83]
活性汚泥から単離された好気性菌Quisquiliibacterium transsilvanicumのみを含む[82]。
Yabuuchi et al. 1996[84] (IJSEMリストに記載 1996)[85]
Ralstonia solanacearum（ラルストニア・ソラナケアルム）は青枯病菌として知られている[86]。Ralstonia taiwanensisはベータプロテオバクリア綱において最初に発見された根粒菌及び窒素固定菌である[27]。
Lopes-Santos et al. 2017[87] (IJSEMリストに記載 2017)[88]
Robbsia andropogonisは植物病原菌であり、シュッコンカスミソウ斑点細菌病の原因菌である[89]。
Caldwell et al. 1981[15] (IJSEMリストに記載 2017)[90]
温泉に生息する好熱性硫黄酸化細菌。通性嫌気性化学合成従属栄養菌Thermothrix thiopara（サーモスリクス・チオパラ）[15]と好気性化学合成独立栄養菌Thermothrix azorensis（サーモスリクス・アゾレンシス）[91]のみを含む。
Estrada-de Los Santos et al. 2018[60] (IJSEMリストに記載 2018)[61]
好気性菌[60]。Trinickia caryophylliは植物病原菌であり、スターチス[92]やカーネーション[93]などの萎凋細菌病の原因菌である。
Vaneechoutte et al. 2004[94] (IJSEMリストに記載 2004)[95]
好気性菌Wautersia eutropha（ワウテルシア・ユートロファ）のみを含む。共重合ポリエステルの製造への応用が研究されている[29]。
Lin et al. 2022[96] (IJSEMリストに記載 2022)[97]
Zeimonas arviとZeimonas sediminisのみを含む。Z. arviは生体異物やアレロケミカルを分解可能な細菌のスクリーニングで分離され、ビフェニル及びフェノール酸代謝遺伝子を持つ[96]。

IJSEMに未承認の属

[編集]
  • "Candidatus Aphodousia"
Gilroy et al. 2021[98] (IJSEMリストに記載 2022)[99]
食用鶏の腸内細菌叢から発見された[98]。"Candidatus Aphodousia faecavium"などを含む。
  • "Caenibaculum"
Wang et al. 2020[100]
下水堆積物から単離された"Caenibaculum baiyangdianus"のみを含む[100]。
  • "Candidatus Protistibacter"
corrig. Vannini et al. 2013[101] (IJSEMリストに記載 2020)[102]
"Candidatus Protistibacter heckmannii"のみを含む。Polynucleobacter necessariusと同じくEuplotes属繊毛虫の細胞内偏性内生共生細菌である[101]。
  • "Candidatus Xiphinematincola"
Palomares-Rius et al. 2021[21] (IJSEMリストに記載 2022)[99]
"Candidatus Xiphinematincola pachtaicus"のみを含む。植物寄生性線虫Xiphinemaに感染する偏性内生共生細菌[21]。

脚注

[編集]
[脚注の使い方]
  1. ^ a b c Garrity GM, Bell JA, Lilburn T (2005). “Family I. Burkholderiaceae fam. nov.”. In Brenner DJ, Krieg NR, Staley JT, Garrity GM. Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria). Springer, New York. p. 575. ISBN 978-0-387-24145-6 
  2. ^ “List of new names and new combinations previously effectively, but not validly, published”. International Journal of Systematic and Evolutionary Microbiology: 1-6. (01 January 2006). doi:10.1099/ijs.0.64188-0. 
  3. ^ a b c Eiko Yabuuchi, Yoshimasa Kosako, Hiroshi Oyaizu, Ikuya Yano, Hisako Hotta, Yasuhiro Hashimoto, Takayuki Ezaki, Michio Arakawa (December 1992). “Proposal of Burkholderia gen. nov. and Transfer of Seven Species of the Genus Pseudomonas Homology Group II to the New Genus, with the Type Species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov.”. Microbiology and Immunology 36 (12): 1251-1275. PMID 1283774. 
  4. ^ a b Anonymous (01 April 1993). “Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB”. International Journal of Systematic and Evolutionary Microbiology 43 (2): 398-399. doi:10.1099/00207713-43-2-398. 
  5. ^ a b c MONIQUE GILLIS, TRAN VAN VAN, RENÉ BARDIN, MART GOOR, PRAKASH HEBBAR, ANNE WILLEMS, PAUL SEGERS, KAREL KERSTERS, THIERRY HEULIN and MARIA P. FERNANDEZ (01 April 1995). “Polyphasic Taxonomy in the Genus Burkholderia Leading to an Emended Description of the Genus and Proposition of Burkholderia vietnamiensis sp. nov. for N2-Fixing Isolates from Rice in Vietnam”. International Journal of Systematic and Evolutionary Microbiology 45 (2): 274-289. doi:10.1099/00207713-45-2-274. 
  6. ^ a b “Notification that New Names and New Combinations Have Appeared in Volume 45, No. 2, of the IJSB”. International Journal of Systematic and Evolutionary Microbiology 45 (3): 621. (01 July 1995). doi:10.1099/00207713-45-3-621. 
  7. ^ a b c Amandeep Sawana, Mobolaji Adeolu, Radhey S Gupta (19 December 2014). “Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species”. Frontiers in Genetics 5: 429. doi:10.3389/fgene.2014.00429. PMC 4271702. PMID 25566316. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4271702/. 
  8. ^ a b Aharon Oren and George M. Garrity (01 July 2015). “Notification of changes in taxonomic opinion previously published outside the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 65 (Pt_7): 2028-2029. doi:10.1099/ijs.0.000286. 
  9. ^ a b Anatoly P. Dobritsa and Mansour Samadpour (15 May 2019). “Reclassification of Burkholderia insecticola as Caballeronia insecticola comb. nov. and reliability of conserved signature indels as molecular synapomorphies”. International Journal of Systematic and Evolutionary Microbiology 69 (7): 2057-2063. doi:10.1099/ijsem.0.003431. PMID 31091185. 
  10. ^ a b Aharon Oren and George M. Garrity (01 October 2019). “Notification that new names of prokaryotes, new combinations, and new taxonomic opinions have appeared in volume 69, part 7 of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 69 (10): 2963-2965. doi:10.1099/ijsem.0.003642. 
  11. ^ Maria Chuvochina, Aaron J Mussig, Pierre-Alain Chaumeil, Adam Skarshewski, Christian Rinke, Donovan H Parks, Philip Hugenholtz (21 July 2023). “Proposal of names for 329 higher rank taxa defined in the Genome Taxonomy Database under two prokaryotic codes”. FEMS Microbiology Letters 370. doi:10.1093/femsle/fnad071. PMC 10408702. PMID 37480240. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10408702/. 
  12. ^ Aharon Oren and George M. Garrity (01 February 2024). “Validation List no. 215. Valid publication of new names and new combinations effectively published outside the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 74 (1): 6173. doi:10.1099/ijsem.0.006173. 
  13. ^ a b c Ivone Vaz-Moreira1,2, Carlos Narciso-da-Rocha1, Evie De Brandt3, Peter Vandamme3, A. C. Silva Ferreira1, Alexandre Lobo-da-Cunha4, Olga C. Nunes2 and Célia M. Manaia1 (1: CBQF – Centro de Biotecnologia e Química Fina – Laboratório Associado, Escola Superior de Biotecnologia, Universidade Católica Portuguesa/Porto, Rua Arquiteto Lobão Vital, Apartado 2511, 4202-401 Porto, Portugal, 2: LEPABE, Laboratório de Engenharia de Processos, Ambiente, Biotecnologia e Energia, Faculdade de Engenharia, Universidade do Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal, 3: Laboratorium voor Microbiologie, Vakgroep Biochemie en Microbiologie, Universiteit Gent, Gent, Belgium, 4: Laboratory of Cell Biology, Institute of Biomedical Sciences Abel Salazar (ICBAS), University of Porto, 4050-313 Porto, Portugal) (01 November 2015). “Hydromonas duriensis gen. nov., sp. nov., isolated from freshwater”. International Journal of Systematic and Evolutionary Microbiology 65 (Pt_11): 4134-4139. doi:10.1099/ijsem.0.000546. PMID 26303147. 
  14. ^ a b c Wen-Ming Chen1, Pei-Bei Xie2, Chiu-Chung Young3 and Shih-Yi Sheu2 (1: Department of Seafood Science, Laboratory of Microbiology, National Kaohsiung Marine University, No. 142, Hai-Chuan Rd. Nan-Tzu, Kaohsiung City 811, Taiwan, ROC, 2: Department of Marine Biotechnology, National Kaohsiung Marine University, No. 142, Hai-Chuan Rd. Nan-Tzu, Kaohsiung City 811, Taiwan, ROC, 3: Department of Soil and Environmental Sciences, College of Agriculture and Natural Resources, National Chung Hsing University, Taichung 402, Taiwan, ROC) (01 January 2017). “Formosimonas limnophila gen. nov., sp. nov., a new member of the family Burkholderiaceae isolated from a freshwater lake”. International Journal of Systematic and Evolutionary Microbiology 67 (1): 17-24. doi:10.1099/ijsem.0.001561. PMID 27902193. 
  15. ^ a b c Douglas E. Caldwell, Sarah J. Caldwell, and J. Paul Laycock (October 1976). “Thermothrix thioparus gen. et sp. nov. a facultatively anaerobic facultative chemolithotroph living at neutral pH and high temperature”. Canadian Journal of Microbiology 22 (10): 1509-1517. doi:10.1139/m76-223. PMID 10063. 
  16. ^ Tomoko Aizawa1, Pisoot Vijarnsorn2, Mutsuyasu Nakajima1 and Michio Sunairi1 (1 Department of Applied Biological Sciences, College of Bioresource Sciences, Nihon University, 1866 Kameino, Fujisawa, Kanagawa 252-0880, Japan ; 2 Banna Experimental Station for Royal Acid Sulfate Soil Improvement Project under Royal Initiatives, Banna, Nakhon Nayok 26110, Thailand *Correspondence: Tomoko Aizawa) (01 July 2011). “Burkholderia bannensis sp. nov., an acid-neutralizing bacterium isolated from torpedo grass (Panicum repens) growing in highly acidic swamps”. International Journal of Systematic and Evolutionary Microbiology 61 (7): 1645-1650. doi:10.1099/ijs.0.026278-0. PMID 20709915. 
  17. ^ a b c Shoko Ohshima1, Yoshinori Sato2, Reiko Fujimura3, Yusuke Takashima1,4, Moriyuki Hamada5, Tomoyasu Nishizawa1, Kazuhiko Narisawa1,4 and Hiroyuki Ohta1,4 (1 Ibaraki University College of Agriculture,3-21-1 Chuo, Ami-machi, Ibaraki 300-0393,Japan ; 2 National Research Institute for Cultural Properties,Tokyo, 13-43 Ueno-park, Taito-ku, Tokyo 110-8713,Japan ; 3 Atmosphere and Ocean Research Institute, The University of Tokyo,5-1-5, Kashiwanoha, Kashiwa-shi, Chiba 277-8564,Japan ; 4 United Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology,3-5-8 Saiwai-cho, Fuchu-shi, Tokyo 183-8509,Japan ; 5 Biological Resource Center, National Institute of Technology and Evaluation (NBRC),2-5-8 Kazusakamatari, Kisarazu-shi, Chiba 292-0818,Japan *Correspondence Hiroyuki Ohta) (01 May 2016). “Mycoavidus cysteinexigens gen. nov., sp. nov., an endohyphal bacterium isolated from a soil isolate of the fungus Mortierella elongata”. International Journal of Systematic and Evolutionary Microbiology 66 (5): 2052-2057. doi:10.1099/ijsem.0.000990. PMID 26920389. 
  18. ^ a b Tsubasa Ohbayashi (Institute for Agro-Environmental Sciences, National Agriculture and Food Research Organization (NARO), Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), Raynald Cossard (Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC)), Gaëlle Lextrait (Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC)), Takahiro Hosokawa (Department of Biology, Faculty of Science, Kyushu University), Vincent Lesieur (CSIRO Health and Biosecurity, European Laboratory), Kazutaka Takeshita (Faculty of Bioresource Sciences, Akita Prefectural University), Kanako Tago (Institute for Agro-Environmental Sciences, National Agriculture and Food Research Organization (NARO)), Peter Mergaert (Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC)), Yoshitomo Kikuchi (Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Hokkaido Center, (Graduate School of Agriculture, Hokkaido University) (2022). “Intercontinental Diversity of Caballeronia Gut Symbionts in the Conifer Pest Bug Leptoglossus occidentalis”. Microbes and Environments 37 (3). doi:10.1264/jsme2.ME22042. 
  19. ^ a b c Hyangmi Kim1,2, Mi-jung Bae3, Sang Mi Yu4, Jeongsu Oh5, Chang Soo Lee1, Bok Yeon Jo1, Jong-Chan Chae2 and Jee-Hwan Kim1 (1: Bioresources Culture Collection Division, NNIBR, Sangju 37242, Republic of Korea, 2: Division of Biotechnology, Chonbuk National University, Iksan 54596, Republic of Korea, 3: Biodiversity Conservation & Change Research Division, NNIBR, Sangju 37242, Republic of Korea, 4: Freshwater Bioresources Utilization Division, NNIBR, Sangju 37242, Republic of Korea, 5: Bioresource Information Research Division, NNIBR, Sangju 37242, Republic of Korea) (01 April 2019). “Ephemeroptericola cinctiostellae gen. nov., sp. nov., isolated from gut of an aquatic insect”. International Journal of Systematic and Evolutionary Microbiology 69 (6): 1546-1550. doi:10.1099/ijsem.0.003296. PMID 30932804. 
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  21. ^ a b c Aharon Oren (The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 9190401 Jerusalem, Israel) (25 November 2022). “Candidatus List No. 4: Lists of names of prokaryotic Candidatus taxa”. International Journal of Systematic and Evolutionary Microbiology 72 (11): 5545. doi:10.1099/ijsem.0.005545. 
  22. ^ a b Virginia Cuadrado1, Margarita Gomila2, Luciano Merini1, Ana M. Giulietti1 and Edward R. B. Moore3,4 (1 Cátedra de Microbiología Industrial y Biotecnología, Facultad de Farmacia y Bioquímica, Universidad de Buenos Aires, Argentina ; 2 Microbiologia, Departament de Biologia, Universitat de les Illes Balears, and Institut Mediterrani d'Estudis Avançats (CSIC-UIB), 07122 Palma de Mallorca, Illes Balears, Spain ; 3 Culture Collection University of Gothenburg (CCUG), Department of Clinical Bacteriology, Sahlgrenska University Hospital, Gothenburg, Sweden ; 4 Sahlgrenska Academy of the University of Gothenburg, Gothenburg, Sweden *Correspondence: Edward R. B. Moore) (01 November 2010). “Cupriavidus pampae sp. nov., a novel herbicide-degrading bacterium isolated from agricultural soil”. International Journal of Systematic and Evolutionary Microbiology 60 (11). doi:10.1099/ijs.0.018341-0. 
  23. ^ Angel Valverde1,5, Pedro Delvasto2, Alvaro Peix1, Encarna Velázquez3, Ignacio Santa-Regina1, Antonio Ballester2, Claudino Rodríguez-Barrueco1, Camino García-Balboa4 and José M. Igual1 (1 Instituto de Recursos Naturales y Agrobiología de Salamanca, Consejo Superior de Investigaciones Científicas, 37071 Salamanca, Spain ; 2 Biohydrometallurgy Research Group, Department of Materials Science and Metallurgical Engineering, Universidad Complutense de Madrid, 28040 Madrid, Spain ; 3 Departamento de Microbiología y Genética, Universidad de Salamanca, 37007 Salamanca, Spain ; 4 Department of Industrial Technology, Universidad Alfonso X ‘El Sabio’, Av. de la Universidad 1, 28691 Villanueva de la Cañada, Madrid, Spain *Correspondence: José M. Igual) (01 October 2006). “Burkholderia ferrariae sp. nov., isolated from an iron ore in Brazil”. International Journal of Systematic and Evolutionary Microbiology 56 (10): 2421-2425. doi:10.1099/ijs.0.64498-0. PMID 17012573. 
  24. ^ Le-Ni Sun1, Dao-Sheng Wang1, En-Dong Yang1, Lian-Cheng Fang2, Yi-Fei Chen2, Xin-Yun Tang1 and Ri-Mao Hua2 (1 School of Life Science, Anhui Agricultural University, Hefei 230036, PR China ; 2 Key Laboratory for Agri-Food Safety, School of Resource & Environment, Anhui Agricultural University, Hefei, Anhui 230036, PR China *Correspondence: Xin-Yun Tang) (10 June 2016). “Cupriavidus nantongensis sp. nov., a novel chlorpyrifos-degrading bacterium isolated from sludge”. International Journal of Systematic and Evolutionary Microbiology 66 (6): 2335-2341. doi:10.1099/ijsem.0.001034. PMID 27001671. 
  25. ^ a b c P. Gerner-Smidt1, H. Keiser-Nielsen3, M. Dorsch4, E. Stackebrandt5, J. Ursing6, J. Blom2, A. C. Christensen7, J. J. Christensen1, W. Frederiksen1, S. Hoffmann1, W. Holten-Andersen1 and Y. T. Ying8 (1: Departments of Clinical Microbiology, Statens Seruminstitut, Artillerivej 5, DK-2300 Copenhagen S, Denmark, 2: Molecular Cell Biology, Statens Seruminstitut, Artillerivej 5, DK-2300 Copenhagen S, Denmark, 3: Haraldsborgvej 7, DK-4000 Roskilde, Denmark, 4: Centre for Bacterial Diversity and Identification, Department of Microbiology, The University of Queensland, St Lucia, Qld 4072, Australia, 5: Deutsche Sammlung für Mikroorganismen und Zellkulturen GmbH, Maschleroder Weg 1B, D-3300 Braunschweig, Germany, 6: Department of Medical Microbiology, Lund University, Malmö General Hospital, S-214 01 Malmö, Sweden 7Carrea del Rost 2 A, 08328 Alella, Spain, 8: III Building 2, Unit 208, XibaHei Dong Li, Chao Yang Districts, (100028) Beijing, China) (01 July 1994). “Lautropia mirabilis gen. nov., sp. nov., a Gram-negative motile coccus with unusual morphology isolated from the human mouth”. International Journal of Systematic and Evolutionary Microbiology 140 (7): 1787-97. doi:10.1099/13500872-140-7-1787. PMID 8075812. 
  26. ^ Tom Coenye1, Enevold Falsen2, Marc Vancanneyt3, Bart Hoste3, John R. W. Govan4, Karel Kersters1 and Peter Vandamme1,5 (1 Laboratorium voor Microbiologie, Universiteit Gent, K. L. Ledeganckstraat 35, B-9000 Gent, Belgium ; 2 Culture Collection, Department of Clinical Bacteriology, University of Göteborg, Göteborg, Sweden ; 3 BCCM/LMG Culture Collection, Laboratorium voor Microbiologie Gent, Universiteit Gent, Belgium ; 4 Department of Medical Microbiology, University of Edinburgh, Edinburgh, UK ; 5 Department of Medical Microbiology, University Hospital UIA, Antwerp, Belgium *Correspondence: T. Coenye) (01 April 1999). “Classification of Alcaligenes faecalis-like isolates from the environment and human clinical samples as Ralstonia gilardii sp. nov.”. International Journal of Systematic and Evolutionary Microbiology 49 (2). doi:10.1099/00207713-49-2-405. 
  27. ^ a b c W M Chen, S Laevens, T M Lee, T Coenye, P De Vos, M Mergeay and P Vandamme (Tajen Institute of Technology, Yen-Pu, Ping-Tung, Taiwan) (01 September 2001). “Ralstonia taiwanensis sp. nov., isolated from root nodules of Mimosa species and sputum of a cystic fibrosis patient”. International Journal of Systematic and Evolutionary Microbiology 51 (5). doi:10.1099/00207713-51-5-1729. 
  28. ^ a b “公開特許公報(A)_Ｌ−スレオニンの分析方法およびＬ−スレオニン脱水素酵素”. 生命科学関連特許情報. 2024年10月11日閲覧。
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  30. ^ Jean P. Euzéby, Aidan C. Parte. “Family Burkholderiaceae”. List of Prokaryotic names with Standing in Nomenclature. 2024年6月29日閲覧。
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  33. ^ a b Aharon Oren1 and George M. Garrity2 (1: The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 91904 Jerusalem, Israel, 2: Department of Microbiology & Molecular Genetics, Biomedical Physical Sciences, Michigan State University, East Lansing, MI 48824-4320, USA) (01 November 2016). “Notification that new names of prokaryotes, new combinations, and new taxonomic opinions have appeared in volume 66, part 8, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 66 (11): 4306-4309. doi:10.1099/ijsem.0.001518. 
  34. ^ “菌根性きのこの高度利用を目指した子実体内ヘルパー細菌の役割解明”. 科学研究費助成事業データベース. 2024年10月7日閲覧。
  35. ^ “Obligate Gut Symbiotic Association with Caballeronia in the Mulberry Seed Bug Paradieuches dissimilis (Lygaeoidea: Rhyparochromidae)”. Microbial Ecology 86: 1307–1318. (30 September 2022). doi:10.1007/s00248-022-02117-2. 
  36. ^ a b Munusamy Madhaiyan1, Wah-Seng See-Too2, Robson Ee2, Venkatakrishnan Sivaraj Saravanan3, Joseph S. Wirth4, Tan Hian Hwee Alex1, Cai Lin1, Soo-Jin Kim5, Hang-Yeon Weon5, Soon-Wo Kwon5, William B. Whitman4 and Lianghui Ji1 (1: Biomaterials and Biocatalysts Group, Temasek Life Sciences Laboratory, 1 Research Link, National University of Singapore, 117604, Singapore, 2: Division of Genetics and Molecular Biology, Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, Malaysia, 3: Department of Microbiology, Indira Gandhi College of Arts and Science, Kathirkamam 605009, Pondicherry, India, 4: Department of Microbiology, 527 Biological Sciences Building, University of Georgia, Athens, GA 30602-2605, USA, 5: Agricultural Microbiology Division, National Institute of Agricultural Science, Rural Development Administration, Wanju-gun, Jeollabuk-do 55365, Republic of Korea) (23 March 2020). “Chitinasiproducens palmae gen. nov., sp. nov., a new member of the family Burkholderiaceae isolated from leaf tissues of oil palm (Elaeis guineensis Jacq.)”. International Journal of Systematic and Evolutionary Microbiology 70 (4): 2640-2647. doi:10.1099/ijsem.0.004084. PMID 32202992. 
  37. ^ Aharon Oren1 and George M. Garrity2 (1: The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 9190401 Jerusalem, Israel, 2: Department of Microbiology & Molecular Genetics, Biomedical Physical Sciences, Michigan State University, East Lansing, MI 48824-4320, USA) (30 July 2020). “Notification that new names of prokaryotes, new combinations, and new taxonomic opinions have appeared in volume 70, part 4 of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 70 (7): 4050-4060. doi:10.1099/ijsem.0.004260. 
  38. ^ a b Shu-Chen Chang 1, Jih-Terng Wang, Peter Vandamme, Jie-Horng Hwang, Poh-Shing Chang, Wen-Ming Chen (1: Department of Seafood Science, National Kaohsiung Institute of Marine Technology, Kaohsiung, Taiwan) (2004 Feb). “Chitinimonas taiwanensis gen. nov., sp. nov., a Novel Chitinolytic Bacterium Isolated from a Freshwater Pond for Shrimp Culture”. Systematic and Applied Microbiology 27 (1): 43-49. doi:10.1078/0723-2020-00252. PMID 15053320. 
  39. ^ “Validation of publication of new names and new combinations previously effectively published outside the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 54 (4): 1005-1006. (01 July 2004). doi:10.1099/ijs.0.63360-0. 
  40. ^ Byung-Yong Kim1, Hang-Yeon Weon2, Seung-Hee Yoo1, Wen-Ming Chen3, Soon-Wo Kwon1, Seung-Joo Go1 and Erko Stackebrandt4 (1: Korean Agricultural Culture Collection (KACC), Microbial Genetics Division, National Institute of Agricultural Biotechnology, Rural Development Administration, Suwon, Republic of Korea, 2: Applied Microbiology Division, National Institute of Agricultural Science and Technology, Rural Development Administration, Suwon, Republic of Korea, 3: Department of Seafood Science, National Kaohsiung Marine University, Kaohsiung, Taiwan, 4: Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Mascheroder Weg 1b, D-38124 Braunschweig, Germany) (01 August 2006). “Chitinimonas koreensis sp. nov., isolated from greenhouse soil in Korea”. International Journal of Systematic and Evolutionary Microbiology 56 (8): 1761-1764. doi:10.1099/ijs.0.64163-0. PMID 16902004. 
  41. ^ “Notification that new names and new combinations have appeared in volume 56, part 8, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 56 (11): 2509-2510. (01 November 2006). doi:10.1099/ijs.0.64760-0. 
  42. ^ N. S. Makkar1 and L. E. Casida JR.1 (1: Microbiology Program, The Pennsylvania State University, University Park, Pennsylvania 16802) (01 October 1987). “Cupriavidus necator gen. nov., sp. nov.; a Nonobligate Bacterial Predator of Bacteria in Soil”. International Journal of Systematic and Evolutionary Microbiology 37 (4): 323-326. doi:10.1099/00207713-37-4-323. 
  43. ^ Peter Vandamme1 and Tom Coenye1 (1: Laboratorium voor Microbiologie, Faculteit Wetenschappen, Universiteit Gent, K.L. Ledeganckstraat 35, B-9000 Gent, Belgium) (01 November 2004). “Taxonomy of the genus Cupriavidus: a tale of lost and found”. International Journal of Systematic and Evolutionary Microbiology 54 (6): 2285-2289. doi:10.1099/ijs.0.63247-0. PMID 15545472. 
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  50. ^ Aharon Oren1 and George M. Garrity2 (1: The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 9190401 Jerusalem, Israel, 2: Department of Microbiology and Molecular Genetics, Biomedical Physical Sciences, Michigan State University, East Lansing, MI 48824-4320, USA) (01 September 2019). “Notification that new names of prokaryotes, new combinations, and new taxonomic opinions have appeared in volume 69, part 6 of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 69 (9): 2630-2631. doi:10.1099/ijsem.0.003517. 
  51. ^ Aharon Oren1 and George M. Garrity2 (1: The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 91904 Jerusalem, Israel, 2: Department of Microbiology & Molecular Genetics, Biomedical Physical Sciences, Michigan State University, East Lansing, MI 48824-4320, USA) (01 April 2017). “Notification that new names of prokaryotes, new combinations and new taxonomic opinions have appeared in volume 67, part 1, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 67 (4): 765-766. doi:10.1099/ijsem.0.001910. 
  52. ^ Aharon Oren1 and George M. Garrity2 (1: The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 91904Jerusalem, Israel, 2: Department of Microbiology and Molecular Genetics, Biomedical Physical Sciences, Michigan State University, East Lansing, MI 48824-4320, USA) (01 February 2016). “Notification that new names of prokaryotes, new combinations and new taxonomic opinions have appeared in volume 65, part 11, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 66 (2): 527-529. doi:10.1099/ijsem.0.000847. 
  53. ^ “Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB”. International Journal of Systematic and Evolutionary Microbiology 45 (2): 418-419. (01 April 1995). doi:10.1099/00207713-45-2-418. 
  54. ^ a b S Spring, P Kämpfer and K H Schleifer (Lehrstuhl für Mikrobiologie, Technische Universität München, Freising, Germany) (01 July 2001). “Limnobacter thiooxidans gen. nov., sp. nov., a novel thiosulfate-oxidizing bacterium isolated from freshwater lake sediment”. International Journal of Systematic and Evolutionary Microbiology 51 (4): 1463-1470. doi:10.1099/00207713-51-4-1463. PMID 11491347. 
  55. ^ “Notification that new names and new combinations have appeared in volume 51, part 4, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 51 (5): 1463-1470. (01 September 2001). doi:10.1099/00207713-51-5-1621. 
  56. ^ Hongsheng Lu1,2,5, Yoshinori Sato2,3, Reiko Fujimura1,2, Tomoyasu Nishizawa1, Takashi Kamijo4 and Hiroyuki Ohta1,2 (1: Ibaraki University College of Agriculture, 3-21-1 Chuou, Ami, Ibaraki 300-0393, Japan, 2: United Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai, Fuchu, Tokyo 183-8509, Japan, 3: Institute for Global Change Adaptation Science, Ibaraki University, 2-1-1 Bunkyo, Mito, Ibaraki 310-8512, Japan, 4: Graduate School of Life and Environmental Science, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8572, Japan, 5: FNC1†Present address: Shandong University of Science and Technology, Qianwangang Economic & Technical Development Zone, Qingdao 26610, PR China) (01 February 2011). “Limnobacter litoralis sp. nov., a thiosulfate-oxidizing, heterotrophic bacterium isolated from a volcanic deposit, and emended description of the genus Limnobacter”. International Journal of Systematic and Evolutionary Microbiology 61 (2): 404-407. doi:10.1099/ijs.0.020206-0. PMID 20348326. 
  57. ^ “Notification that new names and new combinations have appeared in volume 61, part 2, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 61 (5): 1014-1015. (01 May 2011). doi:10.1099/ijs.0.033506-0. 
  58. ^ Tuan Manh Nguyen 1 2, Jaisoo Kim 3 (1: Department of Life Science, College of Natural Sciences, Kyonggi University, Suwon, 16227, Republic of Korea, 2: Thai Nguyen University of Agriculture and Forestry, Quyet Thang Commune, Thai Nguyen, Vietnam, 3: Department of Life Science, College of Natural Sciences, Kyonggi University, Suwon, 16227, Republic of Korea) (30 June 2017). “Limnobacter humi sp. nov., a thiosulfate-oxidizing, heterotrophic bacterium isolated from humus soil, and emended description of the genus Limnobacter Spring et al. 2001”. Journal of Microbiology 55: 508–513. doi:10.1007/s12275-017-6645-7. PMID 28664518. 
  59. ^ Aharon Oren1 and George M. Garrity2 (1: The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 9190401 Jerusalem, Israel, 2: Department of Microbiology and Molecular Genetics, Biomedical Physical Sciences, Michigan State University, East Lansing, MI 48824-4320, USA) (01 January 2018). “Notification of changes in taxonomic opinion previously published outside the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 68 (1): 7-8. doi:10.1099/ijsem.0.002502. 
  60. ^ a b c d Paulina Estrada-de Los Santos 1, Marike Palmer 2, Belén Chávez-Ramírez 3, Chrizelle Beukes 4, Emma T Steenkamp 5, Leah Briscoe 6, Noor Khan 7, Marta Maluk 8, Marcel Lafos 9, Ethan Humm 10, Monique Arrabit 11, Matthew Crook 12, Eduardo Gross 13, Marcelo F Simon 14, Fábio Bueno Dos Reis Junior 15, William B Whitman 16, Nicole Shapiro 17, Philip S Poole 18, Ann M Hirsch 19, Stephanus N Venter 20, Euan K James 21 (1: Instituto Politécnico Nacional, Escuela Nacional de Ciencias Biológicas, 11340 Cd. de Mexico, Mexico, 2: Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0083, South Africa, 3: Instituto Politécnico Nacional, Escuela Nacional de Ciencias Biológicas, 11340 Cd. de Mexico, Mexico, 4: Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0083, South Africa, 5: Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0083, South Africa, 6: Department of Molecular, Cell, and Developmental Biology and Molecular Biology Institute, University of California, Los Angeles, CA 90095, USA, 7: Department of Molecular, Cell, and Developmental Biology and Molecular Biology Institute, University of California, Los Angeles, CA 90095, USA, 8: The James Hutton Institute, Dundee DD2 5DA, UK, 9: The James Hutton Institute, Dundee DD2 5DA, UK, 10: Department of Molecular, Cell, and Developmental Biology and Molecular Biology Institute, University of California, Los Angeles, CA 90095, USA, 11: Department of Molecular, Cell, and Developmental Biology and Molecular Biology Institute, University of California, Los Angeles, CA 90095, USA. mnarrabit@ucla.edu. 12450G Tracy Hall Science Building, Weber State University, Ogden, 84403 UT, USA, 13: Center for Electron Microscopy, Department of Agricultural and Environmental Sciences, Santa Cruz State University, 45662-900 Ilheus, BA, Brazil, 14: Embrapa CENARGEN, 70770-917 Brasilia, Distrito Federal, Brazil, 15: Embrapa Cerrados, 73310-970 Planaltina, Distrito Federal, Brazil. fabio.reis@embrapa.br. 16Department of Microbiology, University of Georgia, Athens, GA 30602, USA, 17: DOE Joint Genome Institute, Walnut Creek, CA 94598, USA, 18: Department of Plant Sciences, University of Oxford, South Parks Road, Oxford OX1 3RB, UK, 19: Department of Molecular, Cell, and Developmental Biology and Molecular Biology Institute, University of California, Los Angeles, CA 90095, USA, 20: Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0083, South Africa, 21: The James Hutton Institute, Dundee DD2 5DA, UK) (2018 Aug 1). “Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae”. Genes (Basel) 9 (8): 389. doi:10.3390/genes9080389. PMC 6116057. PMID 30071618. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6116057/. 
  61. ^ a b Aharon Oren1 and George M. Garrity2 (1: The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 9190401 Jerusalem, Israel, 2: Department of Microbiology and Molecular Genetics, Biomedical Physical Sciences, Michigan State University, East Lansing, MI 48824-4320, USA) (23 October 2018). “List of new names and new combinations previously effectively, but not validly, published”. International Journal of Systematic and Evolutionary Microbiology 68 (11): 3379-3393. doi:10.1099/ijsem.0.003071. 
  62. ^ Aharon Oren1 and George M. Garrity2 (1 The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 91904 Jerusalem, Israel ; 2 Department of Microbiology & Molecular Genetics, Biomedical Physical Sciences, Michigan State University, East Lansing, MI 48824-4320, USA) (01 August 2016). “Notification that new names of prokaryotes, new combinations and new taxonomic opinions have appeared in volume 66, part 5, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 66 (8): 2767-2768. doi:10.1099/ijsem.0.001168. 
  63. ^ a b c T Coenye, E Falsen, B Hoste, M Ohlén, J Goris, J R Govan, M Gillis and P Vandamme (1 Laboratorium voor Microbiologie, Universiteit Gent, Belgium) (01 March 2000). “Description of Pandoraea gen. nov. with Pandoraea apista sp. nov., Pandoraea pulmonicola sp. nov., Pandoraea pnomenusa sp. nov., Pandoraea sputorum sp. nov. and Pandoraea norimbergensis comb. nov.”. International Journal of Systematic and Evolutionary Microbiology 50 (2): 887-899. doi:10.1099/00207713-50-2-887. PMID 10758901. 
  64. ^ “Notification that new names and new combinations have appeared in volume 50, part 2, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 50 (3): 951-953. (01 May 2000). doi:10.1099/00207713-50-3-951. 
  65. ^ Sang Eun Jeong1, Hyo Jung Lee1, Baolei Jia1 and Che Ok Jeon1 (1 Department of Life Science, Chung-Ang University, Seoul 06974, Republic of Korea *Correspondence Che Ok Jeon) (01 September 2016). “Pandoraea terrae sp. nov., isolated from forest soil, and emended description of the genus Pandoraea Coenye et al. 2000”. International Journal of Systematic and Evolutionary Microbiology 66 (9): 3524-3530. doi:10.1099/ijsem.0.001229. PMID 27267599. 
  66. ^ Aharon Oren1 and George M. Garrity2 (1 The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 91904 Jerusalem, Israel ; 2 Department of Microbiology & Molecular Genetics, Biomedical Physical Sciences, Michigan State University, East Lansing, MI 48824-4320, USA *Correspondence Aharon Oren) (01 December 2016). “Notification that new names of prokaryotes, new combinations, and new taxonomic opinions have appeared in volume 66, part 9, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 66 (12): 4921-4923. doi:10.1099/ijsem.0.001620. 
  67. ^ Rangasamy Anandham1,2, Pandiyan Indiragandhi2,3, Soon Wo Kwon4, Tong Min Sa2, Che Ok Jeon5, Yong Ki Kim1 and Hyeong Jin Jee1 (1 Organic Agriculture Division, National Academy of Agricultural Science (formerly National Institute of Agricultural Science and Technology), Rural Development Administration, Suwon 441-707, Republic of Korea ; 2 Department of Agricultural Chemistry, Chungbuk National University, Cheongju 361-763, Republic of Korea ; 3 Department of Agricultural Biology, Chungbuk National University, Cheongju 361-763, Republic of Korea ; 4 Korean Agricultural Culture Collection, National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, Republic of Korea ; 5 Department of Life Science, Chung-Ang University, Seoul 156-756, Republic of Korea *Correspondence: Tong Min Sa) (01 January 2010). “Pandoraea thiooxydans sp. nov., a facultatively chemolithotrophic, thiosulfate-oxidizing bacterium isolated from rhizosphere soils of sesame (Sesamum indicum L.)”. International Journal of Systematic and Evolutionary Microbiology 60 (1): 21-26. doi:10.1099/ijs.0.012823-0. PMID 19643869. 
  68. ^ Nurettin Sahin1, Akio Tani2, Recep Kotan3, Ivo Sedláček4, Kazuhide Kimbara2 and Abdurrahman U. Tamer5 (1 Egitim Fakultesi, Mugla University, Mugla, Turkey ; 2 Institute of Plant Science and Resources, Okayama University, Okayama, Japan ; 3 Department of Plant Protection, Faculty of Agriculture, Ataturk University, Erzurum, Turkey ; 4 Czech Collection of Microorganisms, Department of Experimental Biology, Faculty of Science, Masaryk University, Brno, Czech Republic ; 5 Faculty of Science and Arts, Celal Bayar University, Manisa, Turkey *Correspondence: Nurettin) (01 September 2011). “Pandoraea oxalativorans sp. nov., Pandoraea faecigallinarum sp. nov. and Pandoraea vervacti sp. nov., isolated from oxalate-enriched culture”. International Journal of Systematic and Evolutionary Microbiology 61 (9): 2247-2253. doi:10.1099/ijs.0.026138-0. PMID 20952546. 
  69. ^ “芳香族炭化水素分解能が高い微生物群集による飽和炭化水素の分解”. 日本農芸化学会 年次大会講演発表データベース. 2024年10月14日閲覧。
  70. ^ “特許公報(B2)_女性ホルモン物質分解性微生物およびその利用”. 生命科学関連特許情報. 2024年10月14日閲覧。
  71. ^ “可逆的脱炭酸酵素群の特性解析と新規炭酸固定法の確立”. KAKEN. 2024年10月14日閲覧。
  72. ^ Aharon Oren1 and George M. Garrity2 (1 The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, Givat Ram, 91904 Jerusalem, Israel ; 2 Department of Microbiology & Molecular Genetics, Biomedical Physical Sciences, Michigan State University, East Lansing, MI 48824-4320, USA) (01 July 2015). “List of new names and new combinations previously effectively, but not validly, published”. International Journal of Systematic and Evolutionary Microbiology 65 (Pt_7): 2017-2025. doi:10.1099/ijs.0.000317. 
  73. ^ Toga Pangihotan Napitupulu1,3, Sawithree Pramoj Na Ayudhya1,4, Tadanori Aimi2 and Norihiro Shimomura2 (1The United Graduate School of Agricultural Sciences, Tottori University, 4-101 Koyama-cho Minami, Tottori 680-8553, Japan. ; 2Faculty of Agriculture, Tottori University, 4-101 Koyama-cho Minami, Tottori 680-8553, Japan. ; 3Research Organization for Environmental and Life Sciences, National Research and Innovation Agency (BRIN), Jl. Raya Jakarta-Bogor Km.46, Cibinong 16911, Indonesia. ; 4Thailand Institute of Scientific and Technological Research (TISTR) 35 Mu3 Technopolis, Khlong Ha, Khlong Luang, Pathumthani 12120, Thailand) (2022-05-31). Journal of Pure and Applied Microbiology 16 (2): 1154-1166. doi:10.22207/JPAM.16.2.43. 
  74. ^ a b Xin Wang1,2, Han Chen1,2, Jing Wang1,2, Siliang Yuan1,2, Dian Jiao1,2, Shanhui Wang1,2, Yaqi Liu1,2, Yan Li3, Jingcheng Dai4, Shuyang Li5 and Dongru Qiu1,2 (1 Key Laboratory of Breeding Biotechnology and Sustainable Aquaculture (CAS), Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, PR China ; 2 University of Chinese Academy of Sciences, Beijing 100049, PR China ; 3 China University of Geosciences (CUG), Wuhan 430074, PR China ; 4 School of Life Science and Technology, Wuhan Polytechnic University, Wuhan 430023, PR China ; 5 Wuhan Ammunition Life-tech Co. Ltd., Wuhan 430000, PR China *Correspondence: Dongru Qiu) (29 January 2024). “Parachitinimonas caeni gen. nov., sp. nov., a novel member of family Burkholderiaceae isolated from activated sludge collected in Shenzhen, PR China”. International Journal of Systematic and Evolutionary Microbiology 74 (1): 6249. doi:10.1099/ijsem.0.006249. PMID 38284383. 
  75. ^ Aharon Oren1 and Markus Göker2 (1 The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 9190401 Jerusalem, Israel ; 2 Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures, Inhoffenstrasse 7B, 38124 Braunschweig, Germany) (02 May 2024). “Notification that new names of prokaryotes, new combinations, and new taxonomic opinions have appeared in volume 74, part 1 of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 74 (4): 6271. doi:10.1099/ijsem.0.006271. 
  76. ^ a b Qin-hua Lin1, Ying-ying Lv1, Zeng-hong Gao1 and Li-hong Qiu1 (1 State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, 510275, PR China *Correspondence: Li-hong Qiu) (18 December 2019). “Pararobbsia silviterrae gen. nov., sp. nov., isolated from forest soil and reclassification of Burkholderia alpina as Pararobbsia alpina comb. nov.”. International Journal of Systematic and Evolutionary Microbiology 70 (2): 1412-1420. doi:10.1099/ijsem.0.003932. PMID 31851603. 
  77. ^ Aharon Oren1 and George M. Garrity2 (1 The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 9190401 Jerusalem, Israel ; 2 Department of Microbiology & Molecular Genetics, Biomedical Physical Sciences, Michigan State University, East Lansing, MI 48824-4320, USA) (29 May 2020). “Notification that new names of prokaryotes, new combinations, and new taxonomic opinions have appeared in volume 70, part 2 of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 70 (5): 2967-2971. doi:10.1099/ijsem.0.004148. 
  78. ^ a b D Jendrossek (1 Institut für Mikrobiologie, Universität Stuttgart, Germany) (01 May 2001). “Transfer of [Pseudomonas] lemoignei, a gram-negative rod with restricted catabolic capacity, to Paucimonas gen. nov. with one species, Paucimonas lemoignei comb. nov.”. International Journal of Systematic and Evolutionary Microbiology 51 (3): 905-908. doi:10.1099/00207713-51-3-905. PMID 11411713. 
  79. ^ “Notification that new names and new combinations have appeared in volume 51, part 3, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 51 (4): 1231-1233. (01 July 2001). doi:10.1099/00207713-51-4-1231. 
  80. ^ a b Martin W. Hahn1, Elke Lang2, Ulrike Brandt1, Qinglong L. Wu1,3 and Thomas Scheuerl1 (1 Institute for Limnology, Austrian Academy of Sciences, Mondseestrasse 9, 5310 Mondsee, Austria ; 2 DSMZ – Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Inhoffenstraße 7B, D-38124 Braunschweig, Germany ; 3 State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, East Beijing Road 73, Nanjing 210008, PR China *Correspondence: Martin W. Hahn) (01 August 2009). “Emended description of the genus Polynucleobacter and the species Polynucleobacter necessarius and proposal of two subspecies, P. necessarius subsp. necessarius subsp. nov. and P. necessarius subsp. asymbioticus subsp. nov.”. International Journal of Systematic and Evolutionary Microbiology 59 (8): 2002-9. doi:10.1099/ijs.0.005801-0. PMC 2956138. PMID 19567561. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2956138/. 
  81. ^ “Notification that new names and new combinations have appeared in volume 59, part 8, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 59 (11): 2649-2650. (01 November 2009). doi:10.1099/ijs.0.019158-0. 
  82. ^ a b Tamás Felföldi1,2, Róbert Dezső Fikó2, Anikó Mentes1, Erika Kovács2, István Máthé2, Peter Schumann3 and Erika Tóth1 (1 Department of Microbiology, ELTE Eötvös Loránd University, Pázmány Péter stny. 1/c, 1117 Budapest, Hungary ; 2 Department of Bioengineering, Sapientia Hungarian University of Transylvania, Piaţa Libertăţii 1, 530104 Miercurea Ciuc, Romania ; 3 Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig, Germany *Correspondence: Tamás Felföldi) (01 November 2017). “Quisquiliibacterium transsilvanicum gen. nov., sp. nov., a novel betaproteobacterium isolated from a waste-treating bioreactor”. International Journal of Systematic and Evolutionary Microbiology 67 (11): 4742-4746. doi:10.1099/ijsem.0.002368. PMID 28950929. 
  83. ^ Aharon Oren1 and George M. Garrity2 (1 The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 9190401 Jerusalem, Israel ; 2 Department of Microbiology and Molecular Genetics, Biomedical Physical Sciences, Michigan State University, East Lansing, MI 48824-4320, USA) (01 February 2018). “Notification that new names of prokaryotes, new combinations, and new taxonomic opinions have appeared in volume 67, part 11, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 68 (2): 471-473. doi:10.1099/ijsem.0.002532. 
  84. ^ E Yabuuchi 1, Y Kosako, I Yano, H Hotta, Y Nishiuchi (1 Department of Bacteriology, Osaka City University Medical School, Japan) (November 1995). “Transfer of two Burkholderia and an Alcaligenes species to Ralstonia gen. Nov.: Proposal of Ralstonia pickettii (Ralston, Palleroni and Doudoroff 1973) comb. Nov., Ralstonia solanacearum (Smith 1896) comb. Nov. and Ralstonia eutropha (Davis 1969) comb. Nov”. Microbiology and Immunology 39 (11): 897-904. doi:10.1111/j.1348-0421.1995.tb03275.x. PMID 8657018. 
  85. ^ “Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB”. International Journal of Systematic and Evolutionary Microbiology 46 (2): 625-626. (01 April 1996). doi:10.1099/00207713-46-2-625. 
  86. ^ 堀田光生1, 土屋健2 (1 農業環境技術研究所 ; 2 九州大学大学院) (2012). “青枯病菌 Ralstonia solanacearum”. 微生物遺伝資源利用マニュアル(12)改訂第2版. 
  87. ^ Lopes-Santos L, Castro DB, Ferreira-Tonin M, Correa DB, Weir BS, Park D, Ottoboni LM, Neto JR, Destefano SA (2017). “Reassessment of the taxonomic position of Burkholderia andropogonis and description of Robbsia andropogonis gen. nov., comb. nov”. Antonie van Leeuwenhoek 110 (6): 727–736. doi:10.1007/s10482-017-0842-6. PMID 28190154. 
  88. ^ Aharon Oren1 and George M. Garrity2 (1 The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 91904 Jerusalem, Israel ; 2 Department of Microbiology & Molecular Genetics, Biomedical Physical Sciences, Michigan State University, East Lansing, MI 48824-4320, USA) (01 September 2017). “List of new names and new combinations previously effectively, but not validly, published”. International Journal of Systematic and Evolutionary Microbiology 67 (9): 3140-3143. doi:10.1099/ijsem.0.002278. 
  89. ^ “MAFF 302546の詳細”. 農業生物資源ジーンバンク. 2024年10月10日閲覧。
  90. ^ “Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB: List No. 6”. International Journal of Systematic and Evolutionary Microbiology 31 (2): 215-218. (01 April 1981). doi:10.1099/00207713-31-2-215. 
  91. ^ ELENA V. ODINTSOVA1, HOLGER W. JANNASCH1, J. ANTHONY MAMONE2 and THOMAS A. LANGWORTHY3 (1 Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543 ; 2 U.S. Biochemical Corporation, Cleveland, Ohio 44128 ; 3 University of South Dakota, Vermillion, South Dakota 57069) (01 April 1996). “Thermothrix azorensis sp. nov., an Obligately Chemolithoautotrophic, Sulfur-Oxidizing, Thermophilic Bacterium”. International Journal of Systematic and Evolutionary Microbiology 46 (2): 422-8. doi:10.1099/00207713-46-2-422. PMID 8934901. 
  92. ^ “MAFF 302900の詳細”. 農業生物資源ジーンバンク. 2024年10月10日閲覧。
  93. ^ “MAFF 302797の詳細”. 農業生物資源ジーンバンク. 2024年10月10日閲覧。
  94. ^ Mario Vaneechoutte1, Peter Kämpfer2, Thierry De Baere1, Enevold Falsen3 and Gerda Verschraegen1 (1 Department of Clinical Chemistry, Microbiology and Immunology, Blok A, Ghent University Hospital, De Pintelaan 185, B-9000 Ghent, Belgium ; 2 Institut für Angewandte Mikrobiologie, Justus Liebig Universität, Giessen, Germany ; 3 Culture Collection of the University of Gøteborg, Gøteborg, Sweden *Correspondence: Mario Vaneechoutte (01 March 2004). “Wautersia gen. nov., a novel genus accommodating the phylogenetic lineage including Ralstonia eutropha and related species, and proposal of Ralstonia [Pseudomonas] syzygii (Roberts et al. 1990) comb. nov.”. International Journal of Systematic and Evolutionary Microbiology 54 (2): 317-327. doi:10.1099/ijs.0.02754-0. PMID 15023939. 
  95. ^ “Notification that new names and new combinations have appeared in volume 54, part 2, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 54 (4): 1007-1009. (01 July 2004). doi:10.1099/ijs.0.63306-0. 
  96. ^ a b Shih-Yao Lin 1, Asif Hameed 1, Chia-Fang Tsai 1, Chiu-Chung Young 2 3 (1 Department of Soil and Environmental Sciences, College of Agriculture and Natural Resources, National Chung Hsing University, 145, XingDa Rd, Taichung, 40227, Taiwan. ; 2 Department of Soil and Environmental Sciences, College of Agriculture and Natural Resources, National Chung Hsing University, 145, XingDa Rd, Taichung, 40227, Taiwan. ; 3 Innovation and Development Center of Sustainable Agriculture, National Chung Hsing University, Taichung, Taiwan.) (02 October 2021). “Zeimonas arvi gen. nov., sp. nov., of the family Burkholderiaceae, harboring biphenyl- and phenolic acid-metabolizing genes, isolated from a long-term ecological research field”. Antonie van Leeuwenhoek 114 (12): 2101–2111. doi:10.1007/s10482-021-01664-x. PMID 34599477. 
  97. ^ Aharon Oren1 and George M. Garrity2 (1 The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 9190401 Jerusalem, Israel ; 2 Department of Microbiology & Molecular Genetics, Biomedical Physical Sciences, Michigan State University, East Lansing, MI 48824-4320, USA) (29 July 2022). “Validation List no. 206. Valid publication of new names and new combinations effectively published outside the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 72 (7): 5422. doi:10.1099/ijsem.0.005422. 
  98. ^ a b Rachel Gilroy 1, Anuradha Ravi 1, Maria Getino 2, Isabella Pursley 2, Daniel L Horton 2, Nabil-Fareed Alikhan 1, Dave Baker 1, Karim Gharbi 3, Neil Hall 3 4, Mick Watson 5, Evelien M Adriaenssens 1, Ebenezer Foster-Nyarko 1, Sheikh Jarju 6, Arss Secka 7, Martin Antonio 6, Aharon Oren 8, Roy R Chaudhuri 9, Roberto La Ragione 2, Falk Hildebrand 1 3, Mark J Pallen 1 2 4 (1 Quadram Institute Bioscience, Norwich, UK. ; 2 School of Veterinary Medicine, University of Surrey, Guildford, UK. ; 3Earlham Institute, Norwich Research Park, Norwich, UK. ; 4 University of East Anglia, Norwich, UK. ; 5 Roslin Institute, University of Edinburgh, Edinburgh, UK. ; 6 Medical Research Council Unit The Gambia at the London School of Hygiene and Tropical Medicine, Atlantic Boulevard, Banjul, The Gambia. ; 7 West Africa Livestock Innovation Centre, Banjul, The Gambia. ; 8 Department of Plant and Environmental Sciences, The Alexander Silberman Institute of Life Sciences, Edmond J. Safra Campus, Hebrew University of Jerusalem, Jerusalem, Israel. ; 9 Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, UK.) (2021 Apr 6). “Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture”. PeerJ 9: e10941. doi:10.7717/peerj.10941. PMC 8035907. PMID 33868800. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8035907/. 
  99. ^ a b Aharon Oren (The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 9190401 Jerusalem, Israel) (25 November 2022). “Candidatus List No. 4: Lists of names of prokaryotic Candidatus taxa”. International Journal of Systematic and Evolutionary Microbiology 72 (11): 5545. doi:10.1099/ijsem.0.005545. 
  100. ^ a b Y. Wang, T. Tian, X. Li, L. Tang, Y. Li, H. Wang, J. Zhang, L. Zhang & X. Zhang. “Caenibaculum baiyandianus gen. nov., sp. nov., a New Bacterium Isolated from Sewage Sediment of Baiyangdian”. Microbiology 89: 122–128. doi:10.1134/S0026261720010166. 
  101. ^ a b Claudia Vannini*, Filippo Ferrantini, Franco Verni, Giulio Petroni (Biology Department, Protistology-Zoology Unit, University of Pisa, 56126 Pisa, Italy) (2013). “A new obligate bacterial symbiont colonizing the ciliate Euplotes in brackish and freshwater: ‘Candidatus Protistobacter heckmanni’”. Aquatic Microbial Ecology (AME) 70: 233-243. doi:10.3354/ame01657. 
  102. ^ Aharon Oren1, George M. Garrity2,3, Charles T. Parker3, Maria Chuvochina4 and Martha E. Trujillo5 (1 The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 9190401 Jerusalem, Israel ; 2 Department of Microbiology & Molecular Genetics, Biomedical Physical Sciences, Michigan State University, East Lansing, MI 48824-4320, USA ; 3 NamesforLife, LLC, PO Box 769, Okemos MI 48805-0769, USA ; 4 Australian Centre for Ecogenomics, University of Queensland, St. Lucia QLD 4072, Brisbane, Australia ; 5Departamento de Microbiología y Genética, Campus Miguel de Unamuno, Universidad de Salamanca, 37007, Salamanca, Spain *Correspondence: Aharon Oren) (30 June 2020). “Lists of names of prokaryotic Candidatus taxa”. International Journal of Systematic and Evolutionary Microbiology 70 (7): 3956-4042. doi:10.1099/ijsem.0.003789. 
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